Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12584326 | chr13:46466032 | G/A | 8.74E-6 | 483 | 15.83 | 17 | 13.1 | KM Plot |
| THCA | rs12584328 | chr13:46466092 | C/T | 4.33E-5 | 490 | 15.7 | 16.8 | 13.1 | KM Plot |
| THCA | rs12585700 | chr13:46465893 | A/G | 8.44E-6 | 486 | 15.7 | 17.03 | 13.1 | KM Plot |
| THCA | rs12599007 | chr16:15144436 | A/C | 1.44E-5 | 485 | 16.63 | 14 | 14.9 | KM Plot |
| THCA | rs12600176 | chr16:15168953 | A/T | 0.000142 | 488 | 16.63 | 13.9 | 14.9 | KM Plot |
| THCA | rs12606473 | chr18:21170753 | G/C | 9.31E-8 | 466 | 15.48 | 16.87 | 14 | KM Plot |
| THCA | rs12608196 | chr18:21178118 | C/A | 3.17E-5 | 469 | 15.7 | 16.33 | 14.28 | KM Plot |
| THCA | rs12610258 | chr19:58167451 | C/G | 0.000106 | 490 | 4.87 | 17.7 | 15 | KM Plot |
| THCA | rs12610292 | chr19:58167753 | C/T | 0.000118 | 483 | 14.93 | 17.78 | 4.87 | KM Plot |
| THCA | rs12628303 | chr22:24245915 | C/T | 7.19E-6 | 468 | 16.22 | 14.9 | 14.47 | KM Plot |
| THCA | rs12628766 | chr22:24233914 | T/G | 1.62E-6 | 483 | 16.37 | 14.65 | 15.08 | KM Plot |
| THCA | rs12630286 | chr3:63048736 | A/G | 0.000169 | 490 | 15.67 | 15.23 | 16.37 | KM Plot |
| THCA | rs1263308 | chr4:3051129 | T/C | 0.000127 | 475 | 15.23 | 15.17 | 16.67 | KM Plot |
| THCA | rs12636398 | chr3:67887104 | A/G | 0.000263 | 486 | 15.65 | 17.62 | 19.7 | KM Plot |
| THCA | rs12643147 | chr4:110748215 | G/C | 7.08E-5 | 480 | 15.7 | 16.02 | 15.3 | KM Plot |